Papers

^* Co-first authors; ^# co-senior authors; ^@ corresponding authors

Sodeinde A^*@, Finch E^*, Li K^*, Breban MI, Bourgikos E, Nolan BL, Feriancek NM, Ott IM, Bakker JW, Hill V, Ross PA, Gu X, Huang AT, Salje H^#, Grubaugh ND^#, Vogels CBF^#@
Heterogeneity in inhibition of genetically diverse dengue virus strains by Wolbachia
bioRxiv 677129 (2025)

Kwon J, Li K, Warren JL, Pandya S, Hahn AM, Yale SARS-CoV-2 Genomic Surveillance Initiative, Pitzer VE, Weinberger D, Grubaugh ND
Utilizing virus genomic surveillance to predict vaccine effectiveness
medRxiv 25329795 (2025)

Murrell CM, Sabaawy A, Wang X, Hashimoto N, Ceres K, Sun Y, Zehr JD, Lehane A, Mader E, Bailey N, Lilly MV, Plimpton L, Reboul G, Brown JJ, Sams K, Singh L, Seiz E, Bourgikos E, Vogels CBF, Ciota AT, Schnurr V, Grenier J, Berthet X, Bento AI, Harrington L, Diuk-Wasser M, Olarte-Castillo X, Goodman LB
TITAN-RNA: A hybrid-capture sequencing panel detects known and unknown Flaviviridae for diagnostics and vector surveillance
bioRxiv 658352 (2025)

Wang X, Brown JJ, Lilly MV, Plimpton L, Murrell CM, Llanos-Soto SG, Zehr JD, Sun Y, Reboul G, Sams K, Sabaawy A, Singh L, Tallmadge RL, Mitchell PK, Anderson RR, Ladd-Wilson SG, Bourgikos E, Vogels CBF, Olarte-Castillo X, Diuk-Wasser M, Goodman LB
TICKHUNTER: A targeted hybridization-capture sequencing approach for the detection and characterization of tick-borne pathogens and blood meals
bioRxiv 658355 (2025)

Peña-Hernández MA, Klein J, Malik A, Coppi A, Kalinich CC, Vogels CBF, Silva J, Yale SARS-CoV-2 Genomic Surveillance Initiative, Peaper DR, Landry M, Wilen C, Grubaugh ND, Schulz WL, Omer SB, Iwasaki A
Comparison of infectious SARS-CoV-2 from the nasopharynx of vaccinated and unvaccinated individuals
medRxiv 21268460 (2021)

Silva J, Lucas C, Sundaram M, Israelow B, Wong P, Klein J, Tokuyama M, Lu P, Venkataraman A, Liu F, Mao T, Oh JE, Park A, Casanovas-Massana A, Vogels CBF, Muenker MC, Zell J, Fournier JB, Campbell M, Chiorazzi M, Ruiz Fuentes E, Yale Impact Research Team, Grubaugh ND, Farhadian SF, Dela Cruz C, Ko AI, Schulz WL, Ring A, Ma S, Omer S, Wyllie AL, Iwasaki A
Saliva viral load is a dynamic unifying correlate of COVID-19 severity and mortality 
medRxiv 21249236 (2021)

Pagano N, Laurent-Rolle M, Chun-Chieh Hsu J, Yale IMPACT Research Team, Vogels CBF, Grubaugh ND, Manuelidis L
Long SARS-CoV-2 nucleocapsid sequences in blood monocytes collected soon after hospital admission
bioRxiv 423113 (2021)

Haba Y, PIPPOP consortium, Korlevic P, McAlister E, Lawniczak MKN, Schumer M, Rose NH, McBride CS
Ancient origin of an urban underground mosquito
Science 390:6771 (2025); bioRxiv 634793 (2025)

Johnson RM^*@, Breban MI^*, Nolan BL, Sodeinde A, Ott IM, Ross PA, Gu X, Grubaugh ND, Perkins TA^#, Brackney DE^#@, Vogels CBF^#@
Implications of successive blood feeding on Wolbachia-mediated dengue virus inhibition in Aedes aegypti mosquitoes
Nature Communications 16: 6971 (2025); bioRxiv 636928 (2025)

Chen NFG, Pham K, Chaguza C, Lopes R, Klaassen F, Kalinich CC, Yale SARS-CoV-2 Genomic Surveillance Initiative, Kerantzas N, Pandya S, Ferguson D, Schulz W, Weinberger D, Pitzer VE, Warren JL, Grubaugh ND, Hahn AH
Integrated Analysis of the 2022 SARS-CoV-2 Omicron Lineage Replacement Dynamics in Connecticut, US
Viruses 17(7), 1020 (2025)

Crandell J, Silva Monteiro V, Pischel L, Fang Z, Zhong Y, Lawres L, Conde L, Meira de Asis G, Macie G, Zaleski A, Lira GS, Higa LM, Breban MI, Vogels CBF, Grubaugh ND, Aoun-Barakat L, Grifoni A, Sette A, Castineiras TM,Chen S, Yildirim I, Vale AM, Omer SB, Lucas C
The impact of antigenic distance on Orthopoxvirus Vaccination and Mpox Infection for cross-protective immunity
Lancet Microbe 101098 (2025); medRxiv 24302065 (2024)

Visser TM, Wang HD, Abbo SR, Vogels CBF, Koenraadt CJM, Pijlman GP
Effect of chikungunya, Mayaro and Una virus coinfection on vector competence of Aedes aegypti mosquitoes
One Health 20: 100991 (2025)

Klontz EH, Chowdhury N, Holbrook N, Solomon IH, Telford 3rd SM, Aliota MT, Vogels CBF, Grubaugh ND, Helgager J, Hughes HR, Velez J, Piantadosi A, Chiu CY, Lemieux J, Branda JA
Analysis of Powassan virus clinical genomes reveals substantial genetic diversity with implications for molecular assay development
Viruses 16(11): 1653 (2024)

Li K, Chaguza C, Chew YT, Chen NFG, Ferguson D, Pandya S, Kerantzas N, Schulz W, Yale SARS-CoV-2 Genomic Surveillance Initiative, Hahn AM, Pitzer VE, Weinberger DM, Grubaugh ND
Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections
PLOS Computational Biology 20(9): e1012469 (2024); medRxiv 24303655 (2024)

Hill V, Cleemput S, Fonseca V, Tegally H, Brito AF, Gifford R, Thuy Tran V, Thi Hue Kien D, Huynh T, Yacoub S, Dieng I, Ndiaye M, Balde D, Diagne MM, Faye O, Salvato R, Luz Wallau G, Gregianini TS, Godinho FMS, Vogels CBF, Breban MI, Leguia M, Jagtap S, Roy R, Hapuarachchi C, Mwanyika GO, Giovanetti M, Alcantara LCJ, Faria NR, Carrington CVF, Hanley KA, Holmes EC, Dumon W, de Oliveira T, Grubaugh ND
A new lineage nomenclature to aid genomic surveillance of dengue virus
PLOS Biology 22(9): e3002834 (2024); medRxiv 24307504 (2024)

Peña-Hernández MA, Madel Alfajaro M, Filler RB, Moriyama M, Keeler EL, Ranglin ZE, Kong Y, Mao T, Menasche BL, Mankowski MC, Zhao Z, Vogels CBF, Hahn AM, Kalinich C, Zhang S, Huston N, Wan H, Araujo-Tavares R, Lindenbach BD, Homer R, Pyle AM, Martinez DR, Grubaugh ND, Israelow B, Iwasaki A, Wilen CB
SARS-CoV-2-related bat viruses evade human intrinsic immunity but lack efficient transmission capacity
Nature Microbiology (2024)

Vogels CBF^*@, Hill V^*, Breban MI, Chaguza C, Paul LM, Sodeinde A, Taylor-Salmon E, Ott IM, Petrone ME, Dijk D, Jonges M, Welkers MRA, Locksmith T, Dong Y, Tarigopula N, Tekin O, Schmedes S, Bunch S, Cano N, Jaber R, Panzera C, Stryker I, Vergara J, Zimler R, Kopp E, Heberlein L, Morrison AM, Michael SF, Grubaugh ND^@
DengueSeq: A pan-serotype whole genome amplicon sequencing protocol for dengue virus
BMC Genomics 25: 433 (2024); medRxiv 23296997 (2023)

Taylor-Salmon E*, Hill V*, Paul LM*, Koch RT*, Breban MI, Chaguza C, Sodeinde A, Warren JL, Bunch S, Cano N, Cone M, Eysoldt S, Garcia A, Gilles N, Hagy A, Heberlein L, Jaber R, Kassens E, Colarusso P, Davis A, Baudin S, Rico E, Mejia-Echeverri A, Scott B, Stanek D, Zimler R, Munoz-Jordán JL, Santiago GA, Adams LE, Paz-Bailey G, Spillane M, Katebi V, Paulino-Ramirez R, Mueses S, Peguero A, Sanchez N, Norman FF, Galán J-C, Huits R, Hamer DH, Vogels CBF^#, Morrison A^#, Michael SF^#, Grubaugh ND^#
Travel surveillance uncovers dengue virus dynamics and introductions in the Caribbean
Nature Communications 15, 3508 (2024); medRxiv 23298412 (2023)

Mao T, Kim J, Peña-Hernández MA, Valle G, Moriyama M, Luyten S, Ott IM, Gomez-Calvo ML, Gehlhausen J, Baker E, Israelow B, Slade M, Sharma L, Liu W, Ryu C, Korde A, Lee CJ, Silva Monteiro V, Lucas C, Dong H, Yang Y, Yale SARS-CoV-2 Genomic Surveillance Initiative, Gopinath S, Wilen CB, Palm N, Dela Cruz CS, Iwasaki A
Intranasal neomycin evokes broad-spectrum antiviral immunity in the upper respiratory tract
PNAS 121 (18) e2319566121 (2024)

Erazo D, Grant L, Ghisbain G, Marini G, Colón-González FJ, Wint W, Rizzoli A, Van Bortel W, Vogels CBF, Grubaugh ND, Mengel M, Frieler K, Thiery W, Dellicour S
Contribution of climate change to the spatial expansion of West Nile virus in Europe
Nature Communications 15:1196  (2024)

Jones FK, Morrison AM, Santiago GA, Rysava K, Zimler RA, Heberlein LA, Kopp E, Florida Department of Health Bureau of Public Health Laboratory Team, Saunders KE, Baudin S, Rico E, Mejía-Echeverri A, Taylor-Salmon E, Hill V, Breban MI, Vogels CBF, Grubaugh ND, Paul LM, Michael SF, Johansson MA, Adams LE, Munoz-Jordan J, Paz-Bailey G, Stanek DR
Introduction and Spread of Dengue Virus 3, Florida, USA, May 2022–April 2023
Emerging Infectious Diseases 30(2): 376-379 (2024)

Koch RT, Erazo D, Folly AJ, Johnson N, Dellicour S, Grubaugh ND, Vogels CBF^@
Genomic epidemiology of West Nile virus in Europe
One Health 18: 100664 (2024)

Earnest R, Hahn AM,  Feriancek NM, Brandt M, Filler RB, Zhao Z, Breban MI,  Vogels CBF, Chen NFG, Koch RT, Porzucek AJ, Sodeinde A, Garbiel A, Keanna C, Litwak H, Stuber HR, Cantoni JL, Pitzer VE, Olarte Castillo XA, Goodman LB, Wilen CB, Linske MA, Williams SC, Grubaugh ND 
Survey of white-footed mice in Connecticut, USA reveals low SARS-CoV-2 seroprevalence and infection with divergent betacoronaviruses
npj Viruses 1: 10 (2023); bioRxiv 559030 (2023)

Brackney DE & Vogels CBF
The known unknowns of Powassan virus ecology
Journal of Medical Entomology tjad095 (2023)

Hill V, Githinji G, Vogels CBF, Bento AI, Chaguza C, Carrington CVF, Grubaugh ND
Towards a global virus genomic surveillance network
Cell Host & Microbe 31(6): 861–873 (2023)

Chen NFG^*, Chaguza C^*, Gagne L^*, Doucette M, Smole S, Buzby E, Hall J, Ash S, Harrington R, Cofsky S, Clancy S, Kapsak CJ, Sevinsky J, Libuit K, Park DJ, Hemarajata P, Garrigues JM, Green NM, Huard RC, Carpenter-Azevedo K, Sierra-Patev S, Pearson C, Incekara K, Nishimura C, Huang JP, Gagnon E, Reever E, Razeq J, Muyombwe A, Borges V, Ferreira R, Sobral D, Duarte S, Santos D, Vieira L, Gomes JP, Aquino C, Savino IM, Felton K, Bajwa M, Hayward N, Miller H, Naumann A, Allman R, Greer N, Fall A, Mostafa HH, McHugh MP, Maloney DM, Dewar R, Kenicer J, Parker A, Mathers K, Wild J, Cotton S, Templeton KE, Churchwell G, Lee PA, Pedrosa M, McGruder B, Schmedes S, Plumb MR, Wang X, Bones Barcellos R, Godinho FMS, Steiner Salvato R, Ceniseros A, Breban MI, Grubaugh ND, Gallagher GR^#@, Vogels CBF^#@
Development of an amplicon-based sequencing approach in response to the global emergence of mpox
PLOS Biology 21(6): e3002151 (2023); medRxiv 22280783 (2022)

Hill V, Koch RT, Bialosuknia SM, Ngo KA, Zink SD, Koetzner CA, Maffei JG, Dupuis II A, Backenson PB, Oliver J, Bransfield AB, Misencik MJ, Petruff TA, Shepard JJ, Warren JL, Gill MS, Baele G, Vogels CBF, Gallagher GR, Burns P, Hentoff A, Smole S, Brown C, Osborne M, Kramer L, Armstrong PM, Ciota AT, Grubaugh ND
Dynamics of Eastern equine encephalitis virus during the 2019 outbreak in the Northeast United States
Current Biology 33: 1-13 (2023); medRxiv 23286851 (2023)

Petrone ME^*, Lucas C^*, Menasche B^*, Breban MI, Yildirim I, Campbell M, Omer SB, Holmes EC, Ko AI, Grubaugh ND, Iwasaki A Wilen CB, Vogels CBF^#, Fauver JR^#
Non-systematic reporting biases of the SARS-CoV-2 variant Mu could impact our understanding of the epidemiological dynamics of emerging variants
Genome Biology and Evolution 15(4):evad052 (2023); medRxiv 22273077 (2022)

Moriyama M, Lucas C, Silva Monteiro V, Yale SARS-CoV-2 Genomic Surveillance Initiative, Iwasaki A.
Enhanced inhibition of MHC-I expression by SARS-CoV-2 Omicron subvariants
PNAS 120(16): e2221652120 (2023); bioRxiv 490614 (2022)

Vogels CBF^*@, Brackney DE^*, Dupuis II AP^*, Robich RM^*, Fauver JR, Brito AF, Williams SC, Anderson JF, Lubelczyk CB, Lange RE, Prusinski MA, Kramer LD, Gangloff-Kaufmann JL, Goodman LB, Baele G, Smith RP^#, Armstrong PM^#, Ciota AT^#, Dellicour S^#@, Grubaugh ND^#@
Phylogeographic reconstruction of the emergence and spread of Powassan virus in the northeastern United States
PNAS 120(16): e2218012120 (2023); bioRxiv 512245 (2022)

Chaguza C, Hahn AM, Petrone ME, Zhou S, Ferguson D, Breban MI, Pham K, Peña-Hernández MA, Castaldi C, Hill V, Yale SARS-CoV-2 Genomic Surveillance Initiative, Schulz W, Swanstrom RI, Roberts SC, Grubaugh ND
Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection
Cell Reports Medicine 4(2): 100943 (2023); medRxiv 22276868 (2022)

Filardi BA, Silva Monteiro V, Vellosa Schwartzmann P, do Prado Martins V, Rosa Zucca LE, Crispim Baiocchi G, Hahn AM, Chen NFG, Pham K, Pérez-Then E, Miric M, Brache V, Cochon L, Larocca RA, Yale SARS-CoV-2 Genomic Surveillance Initiative, Della Rosa Mendez R, Bardini Silveira D, Pinto AR, Croda J, Yildirim I, Omer SB, Ko AI, Vermund SH, Grubaugh ND, Iwasaki A, Lucas C
Age-dependent impairment in antibody responses elicited by a homologous CoronaVac booster dose
Science Translational Medicine 15(683): eade60 (2023); medRxiv 22280704 (2022)

Oliveira G^*, Vogels CBF^*, Zolfaghari A, Saraf S, Klitting R, Weger-Lucarelli J, Ontiveros CO, Agarwal R, Leon KP, Tsetsarkin KA, Harris E, Ebel GD, Wohl S, Grubaugh ND, Andersen KG
Genomic and phenotypic analyses suggest moderate fitness differences among Zika virus lineages
PLOS Neglected Tropical Diseases 17(2): e0011055 (2023); bioRxiv 478673 (2022)

Hart C, Hassett E, Vogels CBF, Shapley D, Grubaugh ND, Thangamani S
Powassan virus lineage I in field-collected Dermacentor variabilis ticks, New York, USA
Emerging Infectious Diseases 29(2):415-417 (2023); medRxiv 22271704 (2022)

Cheemarla NG, Brito AF, Fauver JF, Alpert T, Vogels CBF, Omer SB, Ko AI, Grubaugh ND, Landry ML, Foxman EF 
Nasal host response-based screening for undiagnosed respiratory viruses: a pathogen discovery study
Lancet Microbe 4(1): e38-e46 (2023); medRxiv 20109306 (2020)

Lange RE, Dupuis II AP, Prusinski MA, Maffei JG, Koetzner CA, Ngo K, Backenson B, Vogels CBF, Grubaugh ND, Kramer LD, Ciota AT
Identification and characterization of novel Lineage 1 Powassan virus strains in New York state
Emerging Microbes & Infections 12(1): e2155585 (2022)  

Garrigues J, Hemarajata P, Lucero B, Alarcón J, Ransohoff H, Marutani A, Kim M, Marlowe E, Realegeno S, Kagan R, Montero C, Chen NFG, Grubaugh ND, Vogels CBF, Green N
Identification of human Monkeypox virus genome deletions that impact diagnostic assays
Journal of Clinical Microbiology 60(12): e01655-22 (2022)

Baaijens JA, Zulli A, Ott IM, Petrone ME, Alpert T, Fauver JR, Kalinich CC, Vogels CBF, Breban MI, Duvallet C, McElroy K, Ghaeli N, Imakaev M, Mckenzie-Bennett M, Robison K, Plocik A, Schilling R, Pierson M, Littlefield R, Spencer M, Simen BB, Yale SARS-CoV-2 Genomic Surveillance Initiative, Hanage WP, Grubaugh ND, Peccia J, Baym  M
Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques
Genome Biology 23, 236 (2022); medRxiv 21262938 (2021)

Poterek ML, Vogels CBF, Grubaugh ND, Ebel GD, Perkins TA, Cavany S
Interactions between seasonal temperature variation and temporal synchrony drive increased arbovirus co-infection incidence
Royal Society Open Science 9(10):220839 (2022); medRxiv 22274743 (2022)

Fang Z, Peng L, Lucas C, Lin Q, Zhou L, Yang L, Feng Y, Ren P, Renauer PA, Monteiro VS, Hahn AM, Park JJ, Zhou X, Yale SARS-CoV-2 Genomic Surveillance Initiative, Grubaugh ND, Wilen CB, Chen S
Heterotypic vaccination responses against SARS-CoV-2 omicron BA.2
Cell Discovery 69 (2022)

Rodino KG, Peaper DR, Kelly BJ, Bushman F, Marques A, Adhikari H, Tu ZJ, Marrero Rolon R, Westblade LF, Green DA, Berry GJ, Wu F, Annavajhala MK, Uhlemann A-C, Parikh BA, McMillen T, Jani K, Babady NE, Hahn AM, Koch RT, Grubaugh ND, Yale SARS-CoV-2 Genomic Surveillance Initiative, Rhoads DD
Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1
Journal of Clinical Microbiology 60(6): e00600-22 (2022); medRxiv 22274187 (2022)

Oliveira CR, Niccolai LM, Sheikha H, Elmansy L, Kalinich CC, Grubaugh ND, Shapiro ED, Yale SARS-CoV-2 Genomic Surveillance Initiative
Assessment of clinical effectiveness of BNT162b2 COVID-19 vaccine in US adolescents
JAMA Network Open 5(3): e220935 (2022)

Petrone ME, Rothman JE, Breban MI, Ott IM, Russell A, Lasek-Nesselquist E, Kelly K, Omerza G, Renzette N, Watkins AE, Kalinich CC, Alpert T, Brito AF, Earnest R, Tikhonova IR, Castaldi C, Kelly JP, Shudt M, Plitnick J, Schneider E, Murphy S, Neal C, Laszlo E, Altajar A, Pearson C, Muyombwe A, Downing R, Razeq J, Niccolai L, Wilson MS, Anderson ML, Wang J, Liu C, Hui P, Mane S, Taylor BP, Hanage WP, Landry ML, Peaper DR, Bilguvar K, Fauver JR, Vogels CBF, Gardner LM, Pitzer VE, St. George K, Adams MD, Grubaugh ND
Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 variants Alpha and Iota
Communications Biology 5: 439 (2022); medRxiv 21259859 (2021)

Chaguza C^*, Coppi A^*, Earnest R^*, Ferguson D, Kerantzas N, Warner F, Young HP, Breban MI, Billig K, Koch RT, Pham K, Kalinich CC, Ott IM, Fauver JR, Hahn AM, Tikhonova IR, Castaldi C, De Kumar B, Pettker CM, Warren JL, Weinberger DM, Landry ML, Peaper DR, Schulz W^#, Vogels CBF^#, Grubaugh ND^#
Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons
Med 13(3): 325-334 (2022); medRxiv 22269660 (2022)

Kuchroo M, Huang J, Wong P, Grenier JC, Shung D, Tong A, Lucas C, Klein J, Burkhardt DB, Gigante S, Godavarthi A, Rieck B, Israelow B, Simonov M, Mao T, Oh JE, Silva J, Takahashi T, Odio CD, Casanovas-Massana A, Fournier J, Yale IMPACT Research Team, Farhadian S, Dela Cruz CS, Ko AI, Hirn MJ, Wilson FP, Hussin JG, Wolf G, Iwasaki A, Krishnaswamy S
Multiscale PHATE identifies multimodal signatures of COVID-19
Nature Biotechnology 40: 681-691 (2022); bioRxiv 383661 (2020)

Earnest R, Uddin R, Matluk N, Renzette N, Siddle KJ, Loreth C, Adams G, Tomkins-Tinch CH, Petrone ME, Rothman JE, Breban MI, Koch RT, Billig K, Fauver JR, Vogels CBF, Turbett S, Bilguvar K, De Kumar B, Landry ML, Peaper DR, Kelly K, Omerza G, Grieser H, Meak S, Martha J, Dewey HH, Kales S, Berenzy D, Carpenter-Azevedo K, King E, Huard RC, Smole SC, Brown CM, Fink T, Lang AS, Gallagher GR, Sabeti PC, Gabriel S, MacInnis BL, New England Variant Investigation Team, Tewhey R, Adams MD, Park DJ, Lemieux JE, Grubaugh ND
Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in  New England, USA
Cell Reports Medicine 3: 100583 (2022); medRxiv 21264641 (2021)

Pérez-Then E^*, Lucas C^*, Silva Monteiro V^*, Miric M^*, Brache V, Cochon L, Vogels CBF, De la Cruz E, Jorge A, De los Santos M, Leon P, Breban MI, Billig K, Yildirim I, Pearson C, Downing R, Gagnon E, Muyombwe A, Razeq J, Campbell M, Ko AI, Omer SB, Grubaugh ND, Vermund SH, Iwasaki A
Neutralizing antibodies against the SARS-CoV-2 Delta and Omicron variants following heterologous CoronaVac plus BNT162b2 booster vaccination
Nature Medicine 28: 481-485 (2022); medRxiv 21268459 (2021)

Alpert T, Vogels CBF, Breban MI, Petrone M, Yale IMPACT Research Team, Wyllie AL, Grubaugh ND, Fauver JR
Sequencing SARS-CoV-2 genomes from saliva
Virus Evolution veab098 (2022); medRxiv 21259289 (2021)

Unterman A, Sumida TS, Nouri N, Yan X, Zhao AY, Gasque V, Schupp JC, Asashima H, Liu Y, Cosme Jr. C, Deng W, Chen M, Brickman Raredon MS, Hoehn K, Wang G, Wang Z, DeIuliis G, Ravindra NG, Li N, Castaldi C, Wong P, Fournier J, Bermejo S, Sharma L, Casanovas-Massana A, Vogels CBF, Wyllie AL, Grubaugh ND, Melillo A, Meng H, Minasyan M, Yale IMPACT research team, Niklason LE, Ko AI, Montgomery RR, Farhadian SF, Iwasaki A, Shaw AC, van Dijk D, Zhao H, Kleinstein SH, Hafler DA, Kaminski N, Dela Cruz CS
Single-Cell Omics Reveals Dyssynchrony of the Innate and Adaptive Immune System in Progressive COVID-19
Nature Communications 13 (1): 1-23 (2022); medRxiv 20153437 (2020) 

Roberts SC, Palacios CF, Grubaugh ND, Alpert T, Ott IM, Breban MI, Yale SARS-CoV-2 Genomic Surveillance Initiative, Martinello RA, Smith C, Davis MW, Mcmanus D, Tirmizi S, Topal JE, Azar MM, Malinis M
An outbreak of SARS-CoV-2 on a transplant unit in the early vaccination era
Transplant Infectious Disease 24 (2): e13782 (2021)

Lee M, Sallah Y, Petrone ME, Ringer M, Cosentino D, Vogels CBF, Fauver JR, Alpert T, Grubaugh ND, Gupta S
COVID-19 outcomes and genomic characterization of SARS-CoV-2 isolated from veterans in New England States: A retrospective analysis
JMIRx Med 2(4): e31503 (2021); medRxiv 21256222 (2021)

Mao T, Israelow B, Lucas C, Vogels CBF, Fedorova O, Breban MI, Menasche BL, Dong H, Linehan M, Yale SARS-CoV-2 Genomic Surveillance Initiative, Wilen CB, Landry ML, Grubaugh ND, Pyle AM, Iwasaki A
A stem-loop RNA RIG-I agonist confers prophylactic and therapeutic protection against acute and chronic SARS-CoV-2 infection in mice
Journal of Experimental Medicine 219 (1): e20211818 (2021); bioRxiv 448754 (2021)

Klein J, Brito AF, Trubin P, Lu P, Wong P, Alpert T, Peña-Hernández MA, Haynes W, Kamath K, Li F, Vogels CBF, Fauver JR, Lucas C, Oh J, Mao T, Silva J, Wyllie AL, Muenker MC, Casanovas-Massana A, Moore AJ, Petrone ME, Kalinich CC, Yale IMPACT Research Team, Dela Cruz C, Farhadian SF, Ring A, Shon J, Ko AI, Grubaugh ND, Israelow B, Iwasaki A, Azar MM 
Longitudinal immune profiling of a SARS-CoV-2 reinfection in a solid organ transplant recipient
The Journal of Infectious Diseases jiab553 (2021); medRxiv 21253992 (2021)

Lucas C^*, Vogels CBF^*, Yildirim I^*, Rothman J, Lu P, Monteiro V, Gelhausen J, Campbell M, Silva J, Tabachnikova A, Peña-Hernandez MA, Muenker MC, Breban MI, Fauver JR, Mohanty S, Huang J, Yale SARS-CoV-2 Genomic Surveillance Initiative, Shaw AC, Ko AI, Omer SB, Grubaugh ND, Iwasaki I
Impact of circulating SARS-CoV-2 variants on mRNA vaccine-induced immunity 
Nature 600: 523-529 (2021); medRxiv 21260307 (2021)

Cai Y, Kim DJ, Takahashi T, Broadhurst DI, Ma S, Rattray NJW, Casanovas-Massana A, Israelow B, Klein J, Lucas C, Mao T, Moore AJ, Muenker CM, Silva J, Wong P, Yale IMPACT Research Team, Ko AI, Khan SA, Iwasaki A, Johnson CH 
Kynurenic acid underlies sex-specific immune responses to COVID-19
Science Signaling 14: eabf8483 (2021); medRxiv 20189159 (2020)

Kissler SM, Fauver JR, Mack C, Tai C, Shiue KY, Kalinich CC, Jednak S, Ott IM, Vogels CBF, Wohlgemuth J, Weisberger J, DiFiori J, Anderson DJ, Mancell J, Ho DD, Grubaugh ND, Grad YH 
Viral dynamics of acute SARS-CoV-2 infection and applications to diagnostic and public health strategies
PLOS Biology 19(7): e3001333 (2021); medRxiv 20217042 (2020)

Wang EY, Mao T, Klein J, Dai Y, Huck JD, Liu F, Zheng NS, Zhou T, Israelow B, Wong P, Lucas C, Silva J, Oh JE, Song E, Perotti ES, Fischer S, Campbell M, Fournier JB, Wyllie AL, Vogels CBF, Ott IM, Kalinich CC, Petrone ME, Watkins AE, Yale IMPACT Research Team, Dela Cruz C, Farhadian SF, Schultz WL, Grubaugh ND, Ko AI, Iwasaki A, Ring AM
Diverse functional autoantibodies in patients with COVID-19
Nature 595: 283-288 (2021); medRxiv 20247205 (2020)

Vogels CBF^*@, Breban MI^*, Ott IM, Alpert T, Petrone ME, Watkins AE, Kalinich CC, Earnest R, Rothman JE, Goed de Jesus J, Morales Claro I, Magalhães Ferreira G, Crispim MAE, Brazil-UK CADDE Genomic Network, Singh L, Tegally H, Anyaneji UJ, Network for Genomic Surveillance in South Africa, Hodcroft EB, Mason CE, Khullar G, Metti J, Dudley JT, MacKay MJ, Nash M, Wang J, Liu C, Hui P, Murphy S, Neal C, Laszlo E,  Landry ML, Muyombwe A, Downing R, Razeq J, de Oliveira T, Faria NR, Sabino EC, Neher RA, Fauver JR^#@, Grubaugh ND^#@ 
Multiplex qPCR assay discriminates variants of concern to enhance global surveillance of SARS-CoV-2 
PLOS Biology 19(5): e3001236 (2021); medRxiv 21250486 (2021)

Lu-Culligan A, Chavan AR, Vijayakumar P, Irshaid L, Couchaine EM, Milano KM, Tang Z, Pope SD, Song E, Vogels CBF, Lu-Culligan WJ, Campbell KH, Casanovas-Massana A, Bermejo S, Toothaker JM, Lee HJ, Liu F, Schulz W, Fournier J, Muenker MC, Moore AJ, Yale IMPACT Research Team, Konnikova L, Neugebauer KM, Ring A, Grubaugh ND, Ko AI, Morotti R, Guller S, Kliman HJ, Iwasaki A, Farhadian SF
Maternal respiratory SARS-CoV-2 infection in pregnancy is associated with a robust inflammatory response at the maternal-fetal interface
Med 2(5): 591-610 (2021); medRxiv 21250452 (2021)

Lucas C, Klein J, Sundaram M, Liu F, Wong P, Silva J, Mao T, Oh JE, Tokuyama M, Lu P, Venkataraman A, Park A, Israelow B, Wyllie AL, Vogels CBF, Muenker MC, Casanovas-Massana A, Schulz WL, Zell J, Campbell M, Fournier J, Yale IMPACT Research Team, Grubaugh ND, Farhadian SF, Wisnewski AV, Dela Cruz C, Omer S, Ko AI, Ring A, Iwasaki A 
Delayed production of neutralizing antibodies correlates with fatal COVID-19
Nature Medicine 27: 1178-1186 (2021); medRxiv 20248331 (2020)

Alpert T, Lasek-Nesselquist E, Brito AF,  Valesano AL, Rothman J, MacKay MJ, Petrone ME ,  Breban MI, Watkins AE, Vogels CBF, Russell A, Kelly JP, Shudt M, Plitnick J, Schneider E, Fitzsimmons WJ, Khullar G, Metti J, Dudley JT, Nash M, Wang J, Liu C, Hui P, Muyombwe A, Downing R, Razeq J, Bart SM, Murphy S, Neal C, Laszlo E, Landry ML, Cook PW, Fauver JR, Mason CE, Lauring AS, St. George K, MacCannell DR, Grubaugh ND
Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States
Cell 184(10): 2595-2604 (2021); medRxiv 21251540 (2021)

Song E, Bartley CM, Chow RD, Ngo TT, Jiang R, Zamecnik CR, Dandekar R, Loudermilk RP, Dai Y, Liu F, Hawes IA, Alvarenga BD, Huynh T, McAlpine L, Rahman N-T, Geng B, Chiarella J, Goldman-Israelow B, Vogels CBF, Grubaugh ND, Casanovas-Massana A, Phinney BS, Salemi M, Alexander J, Gallego JA, Lencz T, Walsh H, Lucas C, Klein J, Mao T, Oh J, Ring A, Spudich A, Ko AI, Kleinstein SH, DeRisi JL, Iwasaki A, Pleasure SJ, Wilson MR, Farhadian SF
Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptoms
Cell Reports Medicine 2: 100288 (2021); bioRxiv 2020.09.11.293464 (2020)

George S, Chattopadhyay Pa A, Gagnon J, Timalsina S, Singh P, Vydyam P, Munshi  M, Chiu JE, Renard I, Harden CA, Ott IM, Watkins AE, Vogels CBF, Lu P, Tokuyama M, Venkataraman A, Casanovas-Massana A, Wyllie AL, Rao V, Campbell M, Farhadian SF, Grubaugh ND, Dela Cruz CS, Ko AI,Yale IMPACT research team, Berna Perez A, Akaho EH, Moledina DG, Testani J, John AR, Ledizet M, Ben Mamoun C
Evidence for SARS-CoV-2 spike protein in the urine of COVID-19 patients 
Kidney360 2: 922-934 (2021); medRxiv 21250637 (2021)

Watkins AE, Fenichel EP, Weinberger DM, Vogels CBF, Brackney DE, Casanovas-Massana A, Campbell M, Fournier J, Bermejo S, Datta R, Yale IMPACT Research Team, Dela Cruz CS, Farhadian SF, Iwasaki A, Ko AI, Grubaugh ND, Wyllie AL 
Increasing SARS-CoV-2 testing capacity with pooled saliva samples 
Emerging Infectious Diseases 27(4): 1184-1187 (2021); medRxiv 20183830 (2020)

Ott IM, Strine MS, Watkins AE, Boot M, Kalinich CC, Harden CA, Vogels CBF, Casanovas-Massana A, Moore AJ, Muenker MC, Nakahata M, Tokuyama M, Nelson A, Fournier J, Bermejo S, Campbell M, Datta R, Yale IMPACT Research team, Dela Cruz CS, Farhadian SF, Ko AI, Iwasaki A, Grubaugh ND, Wilen CB, Wyllie AL
Stability of SARS-CoV-2 RNA in nonsupplemented saliva 
Emerging Infectious Diseases 27(4):1146-1150 (2021); medRxiv 20165233 (2020)

Peters J, Alhasan S, Vogels CBF, Grubaugh ND, Farhadian SF, Longbrake EE 
MOG-associated encephalitis following SARS-CoV-2 infection
Multiple Sclerosis and Related Disorders 50:102857 (2021)

Weiss JJ, Attuquayefio TN, White EB, Li F, Herz RS, White TL, Campbell M, Geng B, Datta R, Wyllie AL, Grubaugh ND, Casanovas-Massana A, Muenker MC, Handoko R, Iwasaki A, Yale IMPACT Research Team, Martinello RA, Ko AI, Small DM, Farhadian SF
Tracking smell loss to identify healthcare workers with SARS-CoV-2 infection 
PLOS One 16(3): e0248025 (2021); medRxiv 20188813 (2020)

Vogels CBF^*@, Watkins AE^*, Harden CA^*, Brackney DE^*, Shafer J, Wang J, Caraballo C, Kalinich CC, Ott IM, Fauver JR, Kudo E, Lu P, Venkataraman A, Tokuyama M, Moore AJ, Muenker MC, Casanovas-Massana A, Fournier J, Bermejo S, Campbell M, Datta R, Nelson A, Yale IMPACT Research Team, Dela Cruz CS, Ko AI, Iwasaki A, Krumholz H, Matheus JD, Hui P, Liu C, Farhadian SF, Sikka R, Wyllie AL^#@, Grubaugh ND^#@
SalivaDirect: A simplified and flexible platform to enhance SARS-CoV-2 testing capacity 
Med 2(3): 263-280 (2021); medRxiv 20167791 (2020)

Wichgers Schreur PJ, Vloet RPM, Kant J, van Keulen L, Gonzales JL, Visser TM, Koenraadt CJM, Vogels CBF, Kortekaas J
Reproducing the Rift Valley fever virus mosquito-lamb-mosquito transmission cycle
Scientific Reports 11: 1477 (2021) 

Kudo E, Israelow B, Vogels CBF, Lu P, Wyllie AL, Tokuyama M, Venkataraman A, Brackney DE, Ott IM, Petrone ME, Earnest R, Lapidus S, Muenker MC, Moore AJ, Casanovas-Massana A, Yale IMPACT Research Team, Omer SB, Dela Cruz CS, Farhadian SF, Ko AI, Grubaugh ND, Iwasaki A 
Detection of SARS-CoV-2 RNA by multiplex RT-qPCR 
PLOS Biology 18(10): e3000867 (2020); bioRxiv 2020.06.16.155887(2020)

Takahashi T, Wong P, Ellingson M, Lucas C, Klein J, Israelow B, Silva J, Oh J, Mao T, Tokuyama M, Lu P, Venkataraman A, Park A, Liu F, Meir A, Sun J, Wang E, Wyllie AL, Vogels CBF, Earnest R, Lapidus S, Ott IM, Moore A, Casanovas A, Dela Cruz C, Fournier J, Odio C, Farhadian S, Grubaugh ND, Schultz W, Ko AI, Ring A, Omer S, Iwasaki A, Yale IMPACT Research Team
Sex differences in immune responses that underlie COVID-19 disease outcomes 
Nature 588: 315-320 (2020); medRxiv 20123414 (2020)

Wyllie AL, Fournier J, Casanovas-Massana A, Campbell M, Tokuyama M, Vijayakumar P, Geng B, Muenker MC, Moore AJ, Vogels CBF, Petrone ME, Ott IM, Lu P, Lu-Culligan A, Klein J, Venkataraman A, Earnest R, Simonov M, Datta R, Handoko R, Naushad N, Sewanan LR, Valdez J, White EB, Lapidus S, Kalinich CC, Jiang X, Kim DJ, Kudo E, Linehan M, Mao T, Moriyama M, Oh JE, Park A, Silva J, Song E, Takahashi T, Taura M, Weizman O-E, Wong P, Yang Y, Bermejo S, Odio C, Omer SB, Dela Cruz CS, Farhadian S, Martinello RA, Iwasaki A, Grubaugh ND, Ko AI
Saliva or nasopharyngeal swab specimens for detection of SARS-CoV-2
New England Journal of Medicine 383: 1283-1286 (2020); medRxiv 20067835 (2020)

Kalinich CC, Jensen CG, Neugebauer P, Petrone ME, Peña-Hernández M, Ott IM, Wyllie AL, Alpert T, Vogels CBF, Fauver JR, Grubaugh ND, Brito AF 
Real-time public health communication of local SARS-CoV-2 genomic epidemiology
PLOS Biology 18(8): e3000869 (2020)

Lucas C, Wong P, Klein J, Castro T, Silva J, Sundaram M, Ellingson M, Mao T, Oh J, Israelow B, Tokuyama M, Lu P, Venkataraman A, Park A, Mohanty S, Wang H, Wyllie AL, Vogels CBF, Earnest R, Lapidus S, Ott I, Moore M, Muenker C, Fournier J, Campbell M, Odio C,  Casanovas-Massana A, Yale IMPACT Research Team, Herbst R, Shaw A, Medzhitov R, Schulz WL, Grubaugh NG, Dela Cruz C, Farhadian S, Ko AI, Omer S, Iwasaki A 
Longitudinal analyses reveal immunological misfiring in severe COVID-19 patients 
Nature 584: 463-469 (2020); medRxiv. 20138289 (2020)

Vogels CBF^@, Brito AF, Wyllie AL, Fauver JR, Ott IM, Kalinich CC, Petrone ME, Casanovas-Massana A, Muenker MC, Moore AJ, Klein J, Lu P, Lu-Culligan A, Jiang X, Kim DJ, Kudo E, Mao T, Moriyama M, Oh JE, Park A, Silva J, Song E, Takahashi T, Taura M, Tokuyama M, Venkataraman A, Weizman O-E, Wong P, Yang Y, Cheemarla NR, White EB, Lapidus S, Earnest R, Geng B, Vijayakumar P, Odio C, Fournier J, Bermejo S, Farhadian S, Dela Cruz CS, Iwasaki A, Ko AI, Landry ML, Foxman EF, Grubaugh ND^@
Analytical sensitivity and efficiency comparisons of SARS-COV-2 qRT-PCR primer-probe sets 
Nature Microbiology 5: 1299-1305 (2020); medRxiv 20048108 (2020)

Hosier H, Farhadian S, Morotti RA, Deshmukh U, Lu-Culligan A, Campbell KH, Yasumoto Y, Vogels CBF, Casanovas-Massana A, Vijayakumar P, Geng B, Odio CD, Fournier J, Brito AF, Fauver JR, Liu F, Alpert T, Tal R, Szigeti-Buck K, Perincheri S, Larsen C, Gariepy A, Aguilar G, Fardelmann KL, Harigopal M, Taylor HS, Pettker CM, Wyllie AL, Dela Cruz C, Ring AM, Grubaugh ND, Ko AI, Horvath TL, Iwasaki A, Reddy UM, Lipkind HS
SARS-CoV-2 Infection of the Placenta
Journal of Clinical Investigation 130(9): 4947-4953 (2020); medRxiv 20083907 (2020)

Abbo SR, Vogels CBF, Visser TM, Geertsema C, van Oers MM, Koenraadt CJM, Pijlman GP
Forced Zika virus infection of Culex pipiens leads to limited virus accumulation in mosquito saliva 
Viruses 12(6), 659 (2020)

Farhadian S, Glick LR, Vogels CBF, Thomas J, Chiarella J, Casanovas-Massana A, Zhou J, Odio C, Vijayakumar P, Geng B, Fournier J, Bermejo S, Fauver JR, Alpert T, Wyllie AL, Turcotte C, Steinle M, Paczkowski P, Dela Cruz C, Wilen C, Ko AI, MacKay S, Grubaugh ND, Spudich S, Aoun Barakat L. 
Acute encephalopathy with elevated CSF inflammatory markers as the initial presentation of COVID-19 
BMC Neurology 20, 248 (2020); Research Square 10.21203/rs.3.rs-28583/v1 (2020)

Möhlmann TWR^*, Vogels CBF^*, Göertz GP, Pijlman GP, ter Braak CJF, te Beest DE, Hendriks M,  Nijhuis EH, Warris S, Drolet BS, van Overbeek L, Koenraadt CJM 
Impact of gut bacteria on the infection and transmission of pathogenic arboviruses by biting midges and mosquitoes
Microbial Ecology 80: 703-717 (2020)

Fauver, JR, Petrone ME, Hodcroft EB, Shioda K, Ehrlich HY, Watts AG, Vogels CBF, Brito AF, Alpert T, Muyombwe A, Razeq J, Downing R, Cheemarla NR, Wyllie AL, Kalinich CC, Ott IM, Quick J, Loman NJ, Neugebauer KM, Greninger AL, Jerome KR, Roychoudhury P, Xie H, Shrestha L, Huang M-L, Pitzer VE, Iwasaki A, Omer SB, Khan K, Bogoch II, Martinello RA, Foxman EF, Landry ML, Neher RA, Ko AI, Grubaugh ND 
Coast-to-coast spread of SARS-CoV-2 during the early epidemic in the United States 
Cell 181: 990-996 (2020); medRxiv 20043828 (2020)

Abbo SR, Visser TM, Wang H, Göertz GP, Fros JP, Abma-Henkens MHC, Geertsema C, Vogels CBF, Koopmans MPG, Reusken CBEM, Hall-Mendelin S, Hall RA, van Oers MM, Koenraadt CJM, Pijlman GP
The invasive Asian bush mosquito Aedes japonicus found in the Netherlands can experimentally transmit Zika virus and Usutu virus 
PLOS Neglected Tropical Diseases 14(4): e0008217 (2020)

Halbach R, Miesen P, Joosten J, Taşköprü E, Pennings B, Vogels CBF, Merkling SH, Koenraadt CJM, Lambrechts L, van Rij RP 
A satellite repeat-derived piRNA controls embryonic development of Aedes 
Nature 580: 274-277 (2020); bioRxiv 2020.01.15.907428 (2020)

Hadfield J, Brito AF, Swetnam DM, Vogels CBF, Tokarz RE, Andersen KG, Smith RC, Bedford T, Grubaugh ND
Twenty years of West Nile virus spread and evolution in the Americas visualized by Nextstrain
PLoS Pathogens 15(10): e1008042 (2019)

Göertz GP, van Bree J, Hiralal A, Fernhout BM, Steffens C, Boeren S, Visser TM, Vogels CBF, Koenraadt CJM, van Oers M, Pijlman GP
Subgenomic flavivirus RNA binds the mosquito DEAD/H-box helicase ME31B and determines Zika virus transmission by Aedes aegypti 
PNAS 116(38): 19136-19144 (2019)

Grubaugh ND, Saraf S, Gangavarapu K, Watts A, Tan AL, Oidtman RJ, Ladner JT, Oliveira G, Matteson NL, Kraemer MUG, Vogels CBF, Hentoff A, Bhatia D, Stanek D, Scott B, Landis V, Stryker I, Cone MR, Kopp EW, Cannons AC, Herlein-Larson L, White S, Gillis LD, Ricciardi MJ, Kwal J, Lichtenberger PK, Magnani DM, Watkins DI, Palacios G, Hamer DH, Gardner LM, Perkins TA, Baele G, Khan K, Morrison A, Isern S, Michael SF, Andersen KG 
Travel surveillance and genomics uncover a hidden Zika outbreak during the waning epidemic 
Cell 178(5): 1057-1071 (2019)

Koenraadt CJM, Möhlmann TWR, Verhulst NO, Spitzen J, Vogels CBF
Effect of overwintering on survival and vector competence of the West Nile virus vector Culex pipiens 
Parasites & Vectors. 12:147 (2019)

Vogels CBF^*, Rückert C^*, Cavany SM^*, Perkins TA, Ebel GD, Grubaugh ND  
Arbovirus coinfection and co-transmission: A neglected public health concern? 
PLoS Biology 17: e3000130 (2019)

Möhlmann TWR, Oymans J, Wichgers Schreur PJW, Koenraadt CJM, Kortekaas J, Vogels CBF 
Vector competence of biting midges and mosquitoes for Shuni virus
PLOS Neglected Tropical Diseases. 12:e0006993 (2018)

Göertz GP, Lingemann M, Geertsema G, Abma-Henkens MHC, Vogels CBF, Koenraadt CJM, van Oers MM, Pijlman GP 
Conserved motifs in the hypervariable domain of chikungunya virus nsP3 required for transmission by Aedes aegypti mosquitoes
PLOS Neglected Tropical Diseases. 12: e0006958 (2018)

Vloet RPM, Vogels CBF, Koenraadt CJM, Pijlman GP, Eiden M, Gonzales JL, van Keulen LJM, Wichgers Schreur PJ, Kortekaas J
Transmission of Rift Valley fever virus from European-bred lambs to Culex pipiens mosquitoes 
PLOS Neglected Tropical Diseases. 11: e0006145 (2017)

Vogels CBF^*, Göertz GP^*, Pijlman GP, Koenraadt CJM 
Vector competence of European mosquitoes for West Nile virus 
Emerging Microbes & Infections 6: e96 (2017)

Vogels CBF^@, Fros JJ, Pijlman GP, van Loon JA, Gort G, Koenraadt CJM 
Virus interferes with host-seeking behaviour of mosquito
Journal of Experimental Biology 220: 3598-3603 (2017)

Vogels CBF^@, Göertz GP, Pijlman GP, Koenraadt CJM 
Vector competence of northern and southern European Culex pipiens pipiens mosquitoes for West Nile virus across a gradient of temperatures 
Medical and Veterinary Entomology 31: 358-364 (2017)

Vogels CBF^*@, Hartemink N^*, Koenraadt CJM
Modelling West Nile virus transmission risk in Europe: effect of temperature and mosquito biotypes on the basic reproduction number
Scientific Reports 7: 5022 (2017)

Göertz GP^*, Vogels CBF^*, Geertsema C, Koenraadt CJM, Pijlman GP
Mosquito co-infection with Zika and chikungunya virus allows simultaneous transmission without affecting the vector competence of Aedes aegypti
PLOS Neglected Tropical Diseases 11: e0005654 (2017)

Vogels CBF^*@, Möhlmann TWR^*, Favia G, Wennergren U, Koenraadt CJM
Latitudinal diversity of Culex pipiens biotypes and hybrids in farm, peri-urban, and wetland habitats in Europe
PLoS One 11: e0166959 (2016)

Vogels CBF^@, Fros JJ, Göertz GP, Pijlman GP, Koenraadt CJM 
Vector competence of northern European Culex pipiens biotypes and hybrids for West Nile virus is differentially affected by temperature
Parasites & Vectors 9: 393 (2016)

Göertz GP, Fros JJ, Miesen P, Vogels CBF, van der Bent ML, Geertsema C, Koenraadt CJM, van Rij RP, van Oers MM, Pijlman GP
Non-coding subgenomic flavivirus RNA is processed by the mosquito RNAi machinery and determines West Nile virus transmission by Culex pipiens mosquitoes 
Journal of Virology 90: 10145-10159 (2016)

Vogels CBF, van de Peppel LJJ, van Vliet AJH, Westenberg M, Ibanez-Justicia A, Stroo A, Buijs JA, Visser TM, Koenraadt CJM
Winter activity and aboveground hybridization between the two biotypes of the West Nile virus vector Culex pipiens 
Vector-Borne and Zoonotic Diseases 15: 619-626 (2015)

Fros JJ, Miesen P, Vogels CBF, Gaibani P, Sambri V, Martina BE, Koenraadt CJM, van Rij RP, Vlak JM, Takken W, Pijlman GP
Comparative Usutu and West Nile virus transmission potential by local Culex pipiens mosquitoes in north-western Europe 
One Health 1: 31-36 (2015)

Fros JJ, Geertsema C, Vogels CBF, Roosjen PP, Failloux A-B, Vlak JM, Koenraadt CJM, Takken W, Pijlman GP
West Nile virus: High transmission rate in north-western European mosquitoes indicates its epidemic potential and warrants increased surveillance
PLOS Neglected Tropical Diseases 9: e0003956 (2015)

Meyer NFV, Esser HJ, Moreno R, van Langevelde F, Liefting Y, Ros Oller D, Vogels CBF, Carver AD, Nielsen CK, Jansen PA
An assessment of the terrestrial mammal communities in forests of Central Panama, using camera-trap surveys
Journal for Nature Conservation 26: 28-35 (2015)

Vogels CBF^@, Bukhari T^@, Koenraadt CJM^@
Fitness consequences of larval exposure to Beauveria bassiana on adults of the malaria vector Anopheles stephensi
Journal of Invertebrate Pathology 119: 19-24 (2014)